Uses of Class
org.jmol.atomdata.RadiusData
Packages that use RadiusData
Package
Description
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Uses of RadiusData in org.jmol.api
Methods in org.jmol.api with parameters of type RadiusDataModifier and TypeMethodDescriptionvoid
JmolEnvCalc.calculate
(RadiusData rd, float maxRadius, BS bsSelected, BS bsIgnore, boolean disregardNeighbors, boolean onlySelectedDots, boolean isSurface, boolean multiModel) void
AtomIndexIterator.setModel
(ModelSet modelSet, int modelIndex, int zeroBase, int atomIndex, T3 center, float distance, RadiusData rd) -
Uses of RadiusData in org.jmol.atomdata
Fields in org.jmol.atomdata declared as RadiusData -
Uses of RadiusData in org.jmol.geodesic
Methods in org.jmol.geodesic with parameters of type RadiusDataModifier and TypeMethodDescriptionvoid
EnvelopeCalculation.calculate
(RadiusData rd, float maxRadius, BS bsSelected, BS bsIgnore, boolean disregardNeighbors, boolean onlySelectedDots, boolean isSurface, boolean multiModel) -
Uses of RadiusData in org.jmol.jvxl.readers
Fields in org.jmol.jvxl.readers declared as RadiusData -
Uses of RadiusData in org.jmol.modelset
Fields in org.jmol.modelset declared as RadiusDataMethods in org.jmol.modelset with parameters of type RadiusDataModifier and TypeMethodDescriptionshort
Atom.calculateMad
(Viewer vwr, RadiusData rd) ModelSet.getAtomsWithinRadius
(float distance, BS bs, boolean withinAllModels, RadiusData rd, BS bsSubset) Get atoms within a specific distance of any atom in a specific set of atoms either within all models or within just the model(s) of those atomsboolean
Measurement.isInRange
(RadiusData radiusData, float value) MeasurementData.set
(int tokAction, Map<String, Integer> htMin, RadiusData radiusData, String property, String strFormat, String units, TickInfo tickInfo, boolean mustBeConnected, boolean mustNotBeConnected, Boolean intramolecular, boolean isAll, int mad, short colix, Text text, float value, BS bsSelected) void
ModelSet.setIteratorForAtom
(AtomIndexIterator iterator, int modelIndex, int atomIndex, float distance, RadiusData rd) void
Atom.setMadAtom
(Viewer vwr, RadiusData rd) void
AtomIteratorWithinModel.setModel
(ModelSet modelSet, int modelIndex, int firstModelAtom, int atomIndex, T3 center, float distance, RadiusData rd) -
Uses of RadiusData in org.jmol.script
Methods in org.jmol.script that return RadiusDataModifier and TypeMethodDescriptionScriptEval.encodeRadiusParameter
(int index, boolean isOnly, boolean allowAbsolute) -
Uses of RadiusData in org.jmol.scriptext
Methods in org.jmol.scriptext with parameters of type RadiusDataModifier and TypeMethodDescriptionMathExt.setContactBitSets
(BS bsA, BS bsB, boolean localOnly, float distance, RadiusData rd, boolean warnMultiModel) -
Uses of RadiusData in org.jmol.shape
Methods in org.jmol.shape with parameters of type RadiusDataModifier and TypeMethodDescriptionvoid
Shape.setShapeSizeRD
(int size, RadiusData rd, BS bsSelected) protected void
AtomShape.setSizeRD
(RadiusData rd, BS bsSelected) protected void
Balls.setSizeRD
(RadiusData rd, BS bsSelected) protected void
Shape.setSizeRD
(RadiusData rd, BS bsSelected) protected void
AtomShape.setSizeRD2
(int i, RadiusData rd, boolean isVisible) -
Uses of RadiusData in org.jmol.shapebio
Methods in org.jmol.shapebio with parameters of type RadiusDataModifier and TypeMethodDescriptionvoid
Backbone.setShapeSizeRD
(int size, RadiusData rd, BS bsSelected) void
BioShapeCollection.setShapeSizeRD
(int size, RadiusData rd, BS bsSelected) -
Uses of RadiusData in org.jmol.shapespecial
Methods in org.jmol.shapespecial with parameters of type RadiusDataModifier and TypeMethodDescriptionprotected void
Dots.setSizeRD
(RadiusData rd, BS bsSelected) protected void
Vectors.setSizeRD2
(int i, RadiusData rd, boolean isVisible) -
Uses of RadiusData in org.jmol.symmetry
Methods in org.jmol.symmetry with parameters of type RadiusDataModifier and TypeMethodDescriptionvoid
UnitCellIterator.setModel
(ModelSet modelSet, int modelIndex, int zeroBase, int atomIndex, T3 center, float distance, RadiusData rd) -
Uses of RadiusData in org.jmol.viewer
Fields in org.jmol.viewer declared as RadiusDataMethods in org.jmol.viewer with parameters of type RadiusDataModifier and TypeMethodDescriptionvoid
ShapeManager.setShapeSizeBs
(int shapeID, int size, RadiusData rd, BS bsSelected)