Class JmolJME
java.lang.Object
java.awt.Component
java.awt.Container
javax.swing.JComponent
javax.swing.JPanel
jme.JME
org.openscience.jmol.app.jmolpanel.JmolJME
- All Implemented Interfaces:
KeyListener
,MouseListener
,MouseMotionListener
,WindowListener
,ImageObserver
,MenuContainer
,Serializable
,EventListener
,Accessible
,JmolDropEditor
- See Also:
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Nested Class Summary
Nested classes/interfaces inherited from class javax.swing.JPanel
JPanel.AccessibleJPanel
Nested classes/interfaces inherited from class javax.swing.JComponent
JComponent.AccessibleJComponent
Nested classes/interfaces inherited from class java.awt.Container
Container.AccessibleAWTContainer
Nested classes/interfaces inherited from class java.awt.Component
Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy
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Field Summary
Fields inherited from class jme.JME
afterClear, allHs, apointx, apointy, application, autoez, autonumber, bpointx, bpointy, bwMode, canonize, depict, depictBorder, doMenu, doTags, dyMode, embedded, infoText, jmeh, keepHydrogens, markUsed, mol, mols, mouseShift, movePossible, multipart, myFrame, newMolecule, nmols, nocenter, number, polarnitro, query, rButton, reaction, relativeStereo, revertStereo, runsmi, showAtomNumbers, showHydrogens, star, stereo, webme, writemi, writemol, writesmi, xButton
Fields inherited from class javax.swing.JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW
Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
dispose()
void
from3D()
getImage
(int marginX, int marginY) inchi()
void
loadContent
(String script) Deprecated.void
When dropped, if the data are 2D, then read directly into JME.static void
void
setFrameVisible
(boolean b) protected boolean
setMol
(boolean checkMultipart) void
smiles()
void
to3D
(boolean isAppend) protected void
toCDXML()
protected void
toMOL()
void
void
void
void
void
void
void
void
Methods inherited from class jme.JME
activateQuery, clear, doAction, doMouseAtomAction, doMouseBondAction, doNewMoleculeAction, getColor, getPreviousMolecule, hasPrevious, initialize, jmeFile, keyDown, keyPressed, keyReleased, keyTyped, molFile, mouseClicked, mouseDown, mouseDrag, mouseDragged, mouseEntered, mouseExited, mouseMove, mouseMoved, mousePressed, mouseReleased, mouseUp, nonisomericSmiles, options, paint, paintMolecularArea, ping, readMolecule, readMolFile, reset, setFrame, setSubstituent, setTemplate, setText, showAtomNumbers, start, stop, update, updateMark
Methods inherited from class javax.swing.JPanel
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI
Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction
Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree
Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
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Constructor Details
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JmolJME
public JmolJME()
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Method Details
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setViewer
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toPNG
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getImage
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windowOpened
- Specified by:
windowOpened
in interfaceWindowListener
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windowClosing
- Specified by:
windowClosing
in interfaceWindowListener
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windowClosed
- Specified by:
windowClosed
in interfaceWindowListener
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windowIconified
- Specified by:
windowIconified
in interfaceWindowListener
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windowDeiconified
- Specified by:
windowDeiconified
in interfaceWindowListener
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windowActivated
- Specified by:
windowActivated
in interfaceWindowListener
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windowDeactivated
- Specified by:
windowDeactivated
in interfaceWindowListener
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dispose
public void dispose() -
from3D
public void from3D() -
smiles
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inchi
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to3D
public void to3D(boolean isAppend) -
setFrameVisible
public void setFrameVisible(boolean b) -
toMOL
protected void toMOL() -
toCDXML
protected void toCDXML() -
loadFile
When dropped, if the data are 2D, then read directly into JME. If 3D then transform via InChI to SMILES and then resolver to 2D.- Specified by:
loadFile
in interfaceJmolDropEditor
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setMol
protected boolean setMol(boolean checkMultipart) -
loadContent
Description copied from interface:JmolDropEditor
Deprecated. Designed to be used for dropping a script into the AppConsole or ScriptEditor in order to open it in the ScriptEditor, but that was never implemented.- Specified by:
loadContent
in interfaceJmolDropEditor
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main
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