FastQCFastQC Report
Fri 12 Jan 2018
UHR_Rep1_Aligned.sortedByCoord.out.bam

Summary

[OK]Basic Statistics

MeasureValue
FilenameUHR_Rep1_Aligned.sortedByCoord.out.bam
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2450
Sequences flagged as poor quality0
Sequence length23-100
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGGGACAACTTAATGTCCTAAAGCATTTTGGTGACTTCTAGGGAATAG70.2857142857142857No Hit
CTGTCTGCCATGACAACAGGAGCGTGTGCGTCAGGCTGGTCCTGCCGCAC70.2857142857142857No Hit
GTGAATTGAGTCCACGCTCCACCGGAGCGCCCAGCCTCGGGGCCGCAGCA50.20408163265306123No Hit
GCAGAAGCTCTTGGAAAAACTGGCAGGGTGCAAGCTGAATGTGGCTGAGG50.20408163265306123No Hit
TGATGATGGGCCGGTTCGAGCGGGATGCCTTCGACACGCTGTTCGACCAC40.163265306122449No Hit
CTGGTGGCCATCCTCCACCTGCTGGTCTCTCTGGCCATGCACTTCAGGGC40.163265306122449No Hit
ATTTTTAATAAAAGGCCTCACTTCCAAGGAGAGCCCAGCCCAGGAGATCC40.163265306122449No Hit
GAGCATCTGGGCGCCGGGACGCTGCAGTGATCCCCGCCAGAGCCTGTGCC30.12244897959183673No Hit
CAAGAATGCCATCAACTCACCGATGTCCCCCGCCCTGGTGGATGTTCACC30.12244897959183673No Hit
CGAAGGATCACCATGCCTTTTGTCAGCAGCTGGTTCTGCAGGTACTCCGT30.12244897959183673No Hit
CATTAATCCAGTCGAGGAGGACCTTGACCAGTTCCTTGAACTTGGGGTCT30.12244897959183673No Hit
CATCTGCAAACTGGGTCTCCAGTTCCGTCACCTCCAAATTCAGCTTGTTC30.12244897959183673No Hit
TGTGTATGTGCGTGTGCGTGCTGGGGGTGGGCACAGCCCCAGGCTGGCCG30.12244897959183673No Hit
GGCCGGTTCGAGCGGGATGCCTTCGACACGCTGTTCGACCACGCCCCGGA30.12244897959183673No Hit
CGCCACCTGGAACAGCATCCACAACGGGGTGATCGCCGTCTTCCAGCGCA30.12244897959183673No Hit
ACCTGCCAAATGCTGCCCCCCACAACAGGGTTGCAGCTCCACTCTGCCCA30.12244897959183673No Hit
GTGTGGACAGGGAGTGTGTGGACAGGGAGCGTGGCCGGCCTTTCCTAGGC30.12244897959183673No Hit
GGAGAGGCAAGAAGGGAGGTCTTCAAACAGGGGCAAAGCTGTCGTATGGG30.12244897959183673No Hit
CTTGGTTCATGGAGGCTCCTACTCTGCCCTCTCCAAGCTCCCCTGGCGGC30.12244897959183673No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers