FastQCFastQC Report
Fri 12 Jan 2018
UHR_Rep3_Aligned.sortedByCoord.out.bam

Summary

[OK]Basic Statistics

MeasureValue
FilenameUHR_Rep3_Aligned.sortedByCoord.out.bam
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1918
Sequences flagged as poor quality0
Sequence length21-100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCACCTGCTGGTCTCTCTGGCCATGCACTTCAGGGCCCCCATCCGCC40.20855057351407716No Hit
GCCATCTGCAAACTGGGTCTCCAGTTCCGTCACCTCCAAATTCAGCTTGT40.20855057351407716No Hit
GTGTAGTATTCCATGGTGTATATGTACCACATTTTCTTTATTCAATCCAC30.15641293013555788No Hit
CCGTCATACAGGTCTTCCTCCAGCTGCTTCACAATGATCCTCTCCTCCAC30.15641293013555788No Hit
CGGCACCCTGGCCAGGAAGCGGAGGGCGCGCGAGGTGAGTGACCTGCAGG30.15641293013555788No Hit
AGTTTGGAAATTTCTCAAAGAACTTAAAACAGAGCTATCATTCGACCCAG30.15641293013555788No Hit
CTCAAAGGTTTTCATATTCTTTAGTTGAAGAATCCCACCTCCTGGAGTCT30.15641293013555788No Hit
CCTCTCAGTTCCGGCTGTTGCTAGGCTGGGGATGGGTTCAGAATAGCCAT30.15641293013555788No Hit
CTGGCTTCCTGCCCAAGATGCCTCCCAGCCCTGCCAGGGCCCGGTGCAGC30.15641293013555788No Hit
CCATCCTCCACCTGCTGGTCTCTCTGGCCATGCACTTCAGGGCCCCCATC30.15641293013555788No Hit
CCCCAACCCCCAGCTGGTTGAGAGCACCCTGCATTCTGCCTCATGGTGCA20.10427528675703858No Hit
CCCAAATCACACACACGCACACACACACGCACATTCAATATTCTGACACA20.10427528675703858No Hit
CTTTTTTTCATCTTTCGGCCAAGGCAGACAACAACGGACTCATCATCCCA20.10427528675703858No Hit
CTGTGGCTGCTTTTGCCTCATCAGGGCAGAGCTGAGTAGTTGCAACAGAG20.10427528675703858No Hit
GTTTTCCCTGACATTCCCAAGTCCTCCTCTTCAGCTCTGGGCCAAAATTT20.10427528675703858No Hit
CCCATGAAGGTGCTGGGCAGCGTCGCAGTGACCTCACTGTGCCTTTCCTT20.10427528675703858No Hit
TGCGATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTC20.10427528675703858No Hit
CTGATGGCGAGCCTTGCCCAGCTTGAGACCTGTTCCCATCTCCATTCAGG20.10427528675703858No Hit
CCAGGACCCAACCAGGGACCGTCCTGTGCCCGACAGGGACCGAGACCGCA20.10427528675703858No Hit
GTTCTTTTCAAATCCCAATCCCTGGGAAGGCACAGTGCCCTCTCCAGGTC20.10427528675703858No Hit
CATGCACATGCGCGCACACACACAGGTGATTTCACAGGTAGATCTGGTCC20.10427528675703858No Hit
CCCCAGAGTCTCACAGTGGGAGGAGGGCAGTATCAATGAGCATGTGACTA20.10427528675703858No Hit
CAGGATTCCAGCTGCCATCCCCAGGCAGGCCCCTCCGCTGGCTCGGCTGC20.10427528675703858No Hit
GTGAGGTTCGCCTGCATCACCGCCTGGAACTCCGTCTCGTTGCAGCAGTA20.10427528675703858No Hit
GTGATTGTTATCAGGAAAAAATATATTAAATGGCTGATAGGAGACCATGG20.10427528675703858No Hit
GTTTCAGTTGGCATTTCACTGACTTCTAGCACGGTTGAACATCTTTCATG20.10427528675703858No Hit
CGTGAATTGAGTCCACGCTCCACCGGAGCGCCCAGCCTCGGGGCCGCAGC20.10427528675703858No Hit
GTCCACAAGCCACCTTGGGATACAAAAAAGCTGACTTTTATTGTTGCTAA20.10427528675703858No Hit
CTTTAATATATACCGAGCTCATACAAATTTATCTGACCCCAGAAGATAGA20.10427528675703858No Hit
CCAAAGCTGAAAGCCCAGCCTTGGCAGCGTCTCCGAATGCCCAGATGGAT20.10427528675703858No Hit
GGCAGTGTAAGGGGATACAAATATTTCCGGAAACCATTTTGTCAATATGT20.10427528675703858No Hit
CAAAACTCTTAAGAAGCCAGGCCCAAGGACCCAATCTCTGGGATCCCAAG20.10427528675703858No Hit
CTGGTGGCCATCCTCCACCTGCTGGTCTCTCTGGCCATGCACTTCAGGGC20.10427528675703858No Hit
ATACAGGTCTTCCTCCAGCTGCTTCACAATGATCCTCTCCTCCACCAGCA20.10427528675703858No Hit
CCCATGCACGAGCGGGTGACCTCCTTCAGCACACCCCCCACCCCAGAACG20.10427528675703858No Hit
GGGGTCTTCCTTGGAAGTGGGGTCAATCATCGTGCGCTCCTCGTTCTCCT20.10427528675703858No Hit
CGGGAAGGCCTGCTGCATTCCAGCCACATCTCGGAGGAGCTGACCACAAC20.10427528675703858No Hit
CCTCTCTGCCCGAGCCCTTTTCCGGGGACCCAGGCCGGTTGGCGGGGTTC20.10427528675703858No Hit
TGCAGATGGACAGATTCATGATCTTCCAGGCCTCCCGCTTCCCGGGTGAG20.10427528675703858No Hit
CTTCCTTGTGTCTCGACTGACTGGGGAGGCGGAGAAGTGGGCTATCCCCC20.10427528675703858No Hit
GTGGGCCACTGTGCCCAGGCTAATGTCACTGAGTTTAATGTGGCCACACC20.10427528675703858No Hit
TTCGTCTAGAGCAGGGTTGCAAACTTTTTCTGTAAAAGGCCAGATAGTAA20.10427528675703858No Hit
CTGGAGTCCAGGGGAACCTAAAGCCTGTATTCAGGCAGTTGTTCAGCAGG20.10427528675703858No Hit
GGCCGGTTCGAGCGGGATGCCTTCGACACGCTGTTCGACCACGCCCCGGA20.10427528675703858No Hit
GGAGTAGATGCCTTGTTATCTCCATTTTACAGGTGAGGAGACTGAGGCAG20.10427528675703858No Hit
TTTCAATGCCAAATGAACCACATTGACATGACCTGGACCATAGGGCTTCC20.10427528675703858No Hit
CCCTAAGCCAGGGGGAGAGGAGCAAAGGGCACGAAATGTGGCCTCCGGGA20.10427528675703858No Hit
TTTTTATTGGGGCTTCCCCCCTCAAGTTCTCTGATGGGCATGAGTCACCC20.10427528675703858No Hit
CTCAAGCTGGGTGTCTTCAGGGTGAACATCCACCAGGGCGGGGGACATCG20.10427528675703858No Hit
CCTCCTTCGAGCAGAGGCCGTCTCCGTTTGGGGATGGACAGCTGTTGGTC20.10427528675703858No Hit
GTTTCATCATGTTGGCCAGGCTTGTCCCGAACTCCTGACCTCAGGTGATC20.10427528675703858No Hit
CTTCCTTCCGTCCTTCCTGGCGCCCTGGTTGCCCACCTTGCCGTGCTTCC20.10427528675703858No Hit
CTGGTCCCTCTTGCTGTCTCCAATGCTCTAGAAAGCAGCAAGTAGGCAGC20.10427528675703858No Hit
TGCAATCAATCCTAGAAGTGTTCTGTGGCTTTGCAACTTTGAGATACCTC20.10427528675703858No Hit
GTCCACATGGTACCCCTTTGGTAAGTAGGCTTCAGTGCATACCAGGGTAT20.10427528675703858No Hit
CTGCGTTCTGGGGGGCGTGCTTGTCCCCTCCACAGCCTCAGCCTGCCCCT20.10427528675703858No Hit
AGAGACTGGACGAGGCCAAAACTGCTGCTCATTCCATTTTTTTCTTGTAA20.10427528675703858No Hit
GTGGATTTGAGGTCCAAGTTAACCACGTCTTCAGGACGAGCCTTGGGTTT20.10427528675703858No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers