FastQCFastQC Report
Fri 12 Jan 2018
HBR_Rep2_Aligned.sortedByCoord.out.bam

Summary

[OK]Basic Statistics

MeasureValue
FilenameHBR_Rep2_Aligned.sortedByCoord.out.bam
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1646
Sequences flagged as poor quality0
Sequence length23-100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGTTGCAGAAGCTCTTGGAAAAACTGGCAGGGTGCAAGCTGAATGTGG50.3037667071688943No Hit
GTGAATTGAGTCCACGCTCCACCGGAGCGCCCAGCCTCGGGGCCGCAGCA50.3037667071688943No Hit
CTTAGGGAACAAGCCCTGGGATTGGACAAAAGGGCCCATGCTGCAGCCAC30.18226002430133656No Hit
AAAACATCACATTTTGGTGTCTCTCAGGCTTTCCCCCCCAACTATGGTTT30.18226002430133656No Hit
CCTAAACCAGTGCTTTCCAAGCAGAGGTGCCATGAGCCTTACAACTGTGG30.18226002430133656No Hit
GTTTTGTTTTCCACTCCTCCTCATTGCTCATCACATACTTACCTGGGGAC30.18226002430133656No Hit
CTCCGATCACGCTTAAAGAGCACCATGGTCCCACCTGAACAGCCTTGGCT30.18226002430133656No Hit
CGCCTGACTGCTTAACTTTAACATTTGAGCTTTTCGGGCCACAACCACCA30.18226002430133656No Hit
CTCAGGCTGACCACAGGGCAGGTGCCAAGTTAAGTGTTTTCATGCACTCC30.18226002430133656No Hit
GTTTCCTCATTTCATCAGACCTAGTGTTCTCACACTGACCACCCATCCAT20.12150668286755771No Hit
TGAAGACCTGACCCTGAGCACCGCCTCCTCGCAGTGCCGCCTTCCAGCCC20.12150668286755771No Hit
GAAGGCCACACGCTCGGCCTCACCCGGGAAGCGGGAGGCCTGGAAGATCA20.12150668286755771No Hit
CTCAAATGTTAAAGTTAAGCAGTCAGGCAAGCTAGAAGAGGTGAGGAGCC20.12150668286755771No Hit
GTGAGAACAGTGTGCATGTGGGTGTGAACACTCAGTGTGGAAAGCAGGTG20.12150668286755771No Hit
CCAACTGCCACCCCACCCAAACTCAGGTCCCCAAGAGACAGAGACACAGG20.12150668286755771No Hit
GGCCATCCTGAGTCTTGGATGTTTGTGCAAAACCTACATTAAAACGAGTG20.12150668286755771No Hit
TCTATGCTGGGTGCCAACTGTTTGCCAGGCACTTCTAGATGCTGGGGTTT20.12150668286755771No Hit
GACACATTGGGTCCCAGGGACAGCTGATGTGTGCTCCAGGGGGAAAATGT20.12150668286755771No Hit
CCCAACAGTCTGCTCTTGCTTCCCTTACCCAGGAGACCCACCTTGTGCCT20.12150668286755771No Hit
CCCACGATATGCTAAGTGAAAACAGCTGCACAAAACTGTATCATTACAGA20.12150668286755771No Hit
CCCACCTCCTGGAGTCTACCCTAATAACTTGACATTGGGAAACAGCCTGT20.12150668286755771No Hit
CAGAGAAAAACACATTCAGCACAGCTTTTCAATTCGTTTGCATTTTAGGA20.12150668286755771No Hit
CTGAGATGCAGCCCTTAGTATTACTATTGTTACAGGAACGAATTCTGTAA20.12150668286755771No Hit
CTCACTTTGGGAGATACTGATGGAGACCAAATAGGTGTCCTGCTCATATA20.12150668286755771No Hit
GGCGAGCATGTCACGTCCAGGGAGTTGGAGCCTGGACTTTGGGTTCCGGC20.12150668286755771No Hit
GGGGCACCTCTCCCTGGCAGGTACTAGTCTTACCAATATAGCTGCTGGAG20.12150668286755771No Hit
GTCCATCCTCTCAACAGCCCCATGAAGAAGGGGCTCTCCCCATTTTATGG20.12150668286755771No Hit
GTTAGTCTCCAGCTAAGGAGGATGAGGCGCAGCCCCAGAGGGAGACCTCA20.12150668286755771No Hit
AATTTCTCTAAATTTTAGGAGAACGGGTATTGATTGATAAAAGGGACAGG20.12150668286755771No Hit
CAGACATGGCAGAACTACGCTCCTTGCAGCAACCACTCGACCACTACAGC20.12150668286755771No Hit
CACACTGCCCCCATTTCTACAGGGGCCCACCTGGTCACCACACCCTCTTG20.12150668286755771No Hit
CTATCACTGAGGTCTCCCTCTGGGGCTGCGCCTCATCCTCCTTAGCTGGA20.12150668286755771No Hit
CTTCTGACCTGTGGCCCTCTTGGGTCTGGCGTCACTCACACTGCCCTCCT20.12150668286755771No Hit
CCGCCGGCAGCTGGTCCAAACCATTTCCATTTTTCAGGAGAAATAAGGAG20.12150668286755771No Hit
CACCTCCTGGAGTCTACCCTAATAACTTGACATTGGGAAACAGCCTGTGC20.12150668286755771No Hit
GCCAGGCCCAAGGACCCAATCTCTGGGATCCCAAGACATATACATGTCTT20.12150668286755771No Hit
CCCCTCTCCAGGTACACCCATCAAGCCACCAGCCTGGCCAAACGGGCATC20.12150668286755771No Hit
CTCCCATCTCCAGTGATACCCTGGTATGCACTGAAGCCTACTTACCAAAG20.12150668286755771No Hit
CCCAGCTAGAAAGCTAGCACAGTGAGCAGGGACCTGCCTTGCTCACTGTC20.12150668286755771No Hit
TAGTGGCCACAGGGAACTACCTGGTGCCTGAAGCTTTCCCACATACCAGA20.12150668286755771No Hit
CAGCAGGAACGCCGGCTCCCCGAGGACCCAGGCTTGACGATTCACCGGGG20.12150668286755771No Hit
CTTATGTGTGTGGGCTTGGGACGAGTGCTGGTATGCACTTAGGACCTTCT20.12150668286755771No Hit
AAAGAACCCTCAGGGTGGATTTGAGGTCCAAGTTAACCACGTCTTCAGGA20.12150668286755771No Hit
CCGTGTTCCAAAGTGCAGGGAGCTATCAAGAAGGTCCTAAGTGCATACCA20.12150668286755771No Hit
GAAAGTTCTGTTTTCCATGGTTTTGACATTCTTTGGACTGTATTGTGACT20.12150668286755771No Hit
GTAGAAGTGGTGGAGAGGAACAAAGTAGTCTTCCAGAAGGCCCATGAGCA20.12150668286755771No Hit
CACACACACACACGCACATTCAATATTCTGACACAAATAGCCCCAAGGGG20.12150668286755771No Hit
AAAAAACACAAATCACCATGCCAAACAAAGGTGGAGCAGCTGCTTGGATT20.12150668286755771No Hit
CCCACTGTGAGTTTTTCTGCAGGGGGTTAATCATACCTGCCTCCCAGGTG20.12150668286755771No Hit
CCCAGGCCCCTGGCTTCAGTCTTTGGGTCCAGCTGTCTCCTCCAGGCAGT20.12150668286755771No Hit
CTCTGACGCAGTTTCCTCATTTCATCAGACCTAGTGTTCTCACACTGACC20.12150668286755771No Hit
CTACGACATCTGCAAGGTCTACCTGGCACGGTGGGGCATCCAAGGACGAT20.12150668286755771No Hit
CACCTTCCTTCTTCACTGTCTTCCTGCCCCAGCTAGAAAGCTAGCACAGT20.12150668286755771No Hit
CAGCGTGTGGCTGACCTCTGGCCAGCATGGTGCAGCCGCAGACGTCCAAA20.12150668286755771No Hit
GGACCATTGTGCCAGTTGCCAATCACTAATGCTGTTACTAACTTTTCAGT20.12150668286755771No Hit
CTTCTCCGCCCGCAGGGTGGAAGCCTCCCGCCTCAGCGCCGAGTTGGTGA20.12150668286755771No Hit
CTTTAAACTTGAAGGACAGCTTGGCTGCAAATGAAATCCTTGGCTTGTTC20.12150668286755771No Hit
GTTTTTATTGGGGCTTCCCCCCTCAAGTTCTCTGATGGGCATGAGTCACC20.12150668286755771No Hit
GGGGCATCCAAGGACGATGGATGAAACAGGACCCCCGGCGGTGGGGGAAC20.12150668286755771No Hit
GCTTAAAGAGCACCATGGTCCCACCTGAACAGCCTTGGCTGGAGTCCAGG20.12150668286755771No Hit
AGAAGGTCCACAATGTGTCCTTCGCCTTTGAGCTGATGCTGGACGGAGGC20.12150668286755771No Hit
GAAGGACCAATGTTGCACCTCTGTTAATGCCTGACTTCAGCTGCTGGTGT20.12150668286755771No Hit
AGCAATAGTCCTATTTTGGGCTGGTGGCTTCTGAGAGGTGACTCATTGTG20.12150668286755771No Hit
CAGGAGGTGGGATTCTTCAACTAAAGAATATGAAAACCTTTGAGGCTTTT20.12150668286755771No Hit
CGGATCCCGGGGGCTCTGCAGATCACCCCGCCCATCTCCTCAATTACTTC20.12150668286755771No Hit
GCCGGTTCGAGCGGGATGCCTTCGACACGCTGTTCGACCACGCCCCGGAT20.12150668286755771No Hit
GAAAACGATCCTCTGGGCAGAAATTGGTGCTGTTGGAGCCGCACAGAGGT20.12150668286755771No Hit
CTTGGTTCATGGAGGCTCCTACTCTGCCCTCTCCAAGCTCCCCTGGCGGC20.12150668286755771No Hit
GCTTTTACAAATGCCACCAAGACCCTGGCTGGGTTGCCAGAGGCAGACAC20.12150668286755771No Hit
GCTAGCTTTCCCACACAGCTGCGAGGGAGGGCAGGTGAAGGGCGAGCCCC20.12150668286755771No Hit
CCTCCCTCTTGCTGGCATCCCGGCCTGTTTCAATGACTACCGCTCTGCTA20.12150668286755771No Hit
CTTCACTAACTCCCATCTCCAGTGATACCCTGGTATGCACTGAAGCCTAC20.12150668286755771No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers