FastQCFastQC Report
Fri 12 Jan 2018
HBR_Rep3_Aligned.sortedByCoord.out.bam

Summary

[OK]Basic Statistics

MeasureValue
FilenameHBR_Rep3_Aligned.sortedByCoord.out.bam
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1358
Sequences flagged as poor quality0
Sequence length22-100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGACACAGCTGTGGCTTCCGCAGCTGGGCTAGTGGACAGGCTGTGCA30.22091310751104565No Hit
CCAAGACAAAGCAACTCTGGCTGATTCCAGCCAGGAGGATTGAGGCCTGT30.22091310751104565No Hit
CCTGGGTAAGGGAAGCAAGAGCAGACTGTTGGGCCAACAGGAGAAGCTCC20.14727540500736377No Hit
CCGTGCTCGGGCAGGCAGGGCTGGCGCTGGACTAGTCCCGTTGGAAGCTG20.14727540500736377No Hit
CTGGTGGCCATCCTCCACCTGCTGGTCTCTCTGGCCATGCACTTCAGGGC20.14727540500736377No Hit
CAGCATCATCAAAACTCTTAAGAAGCCAGGCCCAAGGACCCAATCTCTGG20.14727540500736377No Hit
CCCAAGGACCCAATCTCTGGGATCCCAAGACATATACATGTCTTTAGGTG20.14727540500736377No Hit
GAAAAACTCACAGTGGGGAAGCGGTGCCGGAACCCAAAGTCCAGGCTCCA20.14727540500736377No Hit
CTTGGGACGAGTGCTGGTATGCACTTAGGACCTTCTTGATAGCTCCCTGC20.14727540500736377No Hit
GTCTCTCATCACTTTTGTGAACAAGCACCTGAACAAGCTGAATTTGGAGG20.14727540500736377No Hit
GTGCTCTTTAAGCGTGATCGGAGGGAAGACACACAGCAGGGCCACCATTC20.14727540500736377No Hit
GTTAGATCTCATCTCTGCCCCCGGGGAGCCTCCCATCTGGTGGGAGACAC20.14727540500736377No Hit
CAATCACCATGTCTGTCTATTAGAGACTGTGCCATTCAAGGAGACGGGGT20.14727540500736377No Hit
CGAATGAGTTTTCTAGGAGGCTCCTCACCTCTTCTAGCTTGCCTGACTGC20.14727540500736377No Hit
GGGGAACCTAAAGCCTGTATTCAGGCAGTTGTTCAGCAGGGCAATTGGGC20.14727540500736377No Hit
GGCAGCTTAAAAAATCAGGTTGAGTTGCTAAAAAACAGTAACTCTAGCTA20.14727540500736377No Hit
CTCACCAACATGCTGGAGAGCGTGATGGCAGAGCTGACCTTGTTACGCAC20.14727540500736377No Hit
AGAGCCTTCCCTGGCTGCAGCAATGGGTCTAAGGGCCCTCCCTCTGTGAC20.14727540500736377No Hit
GGGGGAACCCCGCTCGGGCCCCTCGGCCGGGTCAGCGGGCCCCACAGCCG20.14727540500736377No Hit
CACGCTGTTCTCAGTGGCAGAGCTGATGTCAGAATCTGGGTCTTGGGCCC20.14727540500736377No Hit
GTGATACCAAATCTCCCCCAGCTCTTAGCTCGGGAGGCCCTGCTTGATCA20.14727540500736377No Hit
GTTAATTTCAAACATGGGAGAAATCTGTAAATTCACTTCCGAAGGCTTTT20.14727540500736377No Hit
CTTCCATGCCCGTAACATCCACCCACCGAGCTAATCACCCCCACTCCTGC20.14727540500736377No Hit
GTTCAACAGTGCATGTGAAGGAAAGTTCTGTTTTCCATGGTTTTGACATT20.14727540500736377No Hit
ATAACAACACGGTCTTCAAATACTGCTGCAACGAGACGGAGTTCCAGGCG20.14727540500736377No Hit
CTGGGAGCCATTCCTGCTATAGCTGGGACCACTTGTGAAACGGCTAGTTG20.14727540500736377No Hit
CTTTGGAGACCCACAGATGGTGCGTGGGTGGCTGCAGGGCTGCAGTGAAG20.14727540500736377No Hit
GTCCAGGTGCACACACAAGCGCTATTGCAAGCAGTTTTCATGCTTTGACT20.14727540500736377No Hit
CTGGGCCACATGGAAACCTTCCAGGTGCCTTTTCCCAGGTGCCACTGTAC20.14727540500736377No Hit
CCGAGATGTGGCTGGAATGCAGCAGGCCTTCCCGTTTCCGCACGACCACC20.14727540500736377No Hit
CTCCTGGAGTCTACCCTAATAACTTGACATTGGGAAACAGCCTGTGCACA20.14727540500736377No Hit
CTCACGGCCAGCTCCGAGGGTTACATGCACAACAATTACACCGCCTTGTT20.14727540500736377No Hit
CCTTTTATCAATCAATACCCGTTCTCCTAAAATTTAGAGAAATTATAACC20.14727540500736377No Hit
GCCGCCTTTCTTGCTGGGACACTCCTGCCACCATCCACAGCTCCCCCGTC20.14727540500736377No Hit
GAATGAATGAACAGAGTAGACCCACTGGTTGTCTAAAGTCACATGGGAAC20.14727540500736377No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers