FastQCFastQC Report
Fri 12 Jan 2018
UHR_Rep2_Aligned.sortedByCoord.out.bam

Summary

[OK]Basic Statistics

MeasureValue
FilenameUHR_Rep2_Aligned.sortedByCoord.out.bam
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2444
Sequences flagged as poor quality0
Sequence length21-100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGCTGGAGGAAGACCTGTATGACGGCCAGGTGCTGCAGAAGCTCTTG50.20458265139116205No Hit
GTGAATTGAGTCCACGCTCCACCGGAGCGCCCAGCCTCGGGGCCGCAGCA50.20458265139116205No Hit
CCCATCTGCAAACTGGGTCTCCAGTTCCGTCACCTCCAAATTCAGCTTGT30.12274959083469722No Hit
GGAGGAGCTGACCACAACTACAGAGATGATGATGGGCCGGTTCGAGCGGG30.12274959083469722No Hit
GCAAGGATAAACATGTCCATCTTGCCCGTATTGGGAATTATCATCTGGCT30.12274959083469722No Hit
CGTCACCACACCCGGCTAATTTTTTGTATATTTAGTAGAGACAGGGTTTC30.12274959083469722No Hit
CTCAGGAAGGCGGATGGGGGCCCTGAAGTGCATGGCCAGAGAGACCAGCA30.12274959083469722No Hit
CCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACGAGGTCAGGAGTTTG30.12274959083469722No Hit
CTGGGCGGCACCCTGGCCAGGAAGCGGAGGGCGCGCGAGGTGAGTGACCT30.12274959083469722No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers